Publications

Recommendations for robust and reproducible preclinical research in personalised medicine
Publication date: January 2023
Author(s): Fosse V, Oldoni E, Bietrix F, Budillon A, Daskalopoulos EP, Fratelli M, Gerlach b, Groenen PMA, Hölter SM, Menon JML, Mobasheri A, Osborne N, Ritskes-Hoitinga M, Ryll B, Schmitt E, Ussi A, Andreu AL & McCormack E on behalf of The PERMIT group
Ten quick tips for biomarker discovery and validation analyses using machine learning
Publication date: August 2022
Author(s): Ramon Diaz-Uriarte, Elisa Gómez de Lope, Rosalba Giugno, Holger Fröhlich, Petr V. Nazarov, Isabel A. Nepomuceno-Chamorro, Armin Rauschenberger, Enrico Glaab
Ref:

PLoS Computational Biology 18(8): e1010357. https://doi.org/10.1371/journal.pcbi.1010357

Evaluating Translational Methods for Personalized Medicine—A Scoping Review
Publication date: July 2022
Author(s): Vibeke Fosse, Emanuela Oldoni, Chiara Gerardi, Rita Banzi, Maddalena Fratelli, Florence Bietrix, Anton Ussi, Antonio L. Andreu, Emmet McCormack, and the PERMIT Group
Ref:

Fosse V, Oldoni E, Gerardi C, Banzi R, Fratelli M, Bietrix F, Ussi A, Andreu AL, McCormack E, the PERMIT Group. Evaluating Translational Methods for Personalized Medicine—A Scoping Review. Journal of Personalized Medicine. 2022; 12(7):1177. https://doi.org/10.3390/jpm12071177

Study designs for clinical trials applied to personalised medicine: a scoping review
Publication date: May 2022
Author(s): Cecilia Superchi1, Florie Brion Bouvier, Chiara Gerardi, Montserrat Carmona, Lorena San Miguel, Luis María Sánchez-Gómez, Iñaki Imaz-Iglesia, Paula Garcia, Jacques Demotes, Rita Banzi, Raphaël Porcher, the PERMIT Group
Ref:

Superchi C, Brion Bouvier F, Gerardi C the PERMIT Group, et al Study designs for clinical trials applied to personalised medicine: a scoping review BMJ Open 2022;12:e052926. doi: 10.1136/bmjopen-2021-052926

Methods for Stratification and Validation Cohorts: A Scoping Review
Publication date: April 2022
Author(s): Teresa Torres Moral, Albert Sanchez-Niubo, Anna Monistrol-Mula, Chiara Gerardi, Rita Banzi, Paula Garcia, Jacques Demotes-Mainard, Josep Maria Haro and the PERMIT Group
Ref:

Torres Moral T, Sanchez-Niubo A, Monistrol-Mula A, Gerardi C, Banzi R, Garcia P, Demotes-Mainard J, Haro JM, the PERMIT Group. Methods for Stratification and Validation Cohorts: A Scoping Review. Journal of Personalized Medicine. 2022; 12(5):688. https://doi.org/10.3390/jpm12050688

Biomarker discovery studies for patient stratification using machine learning analysis of omics data: a scoping review
Publication date: December 2021
Author(s): Glaab E, Rauschenberger A, Banzi R, Gerardi C, Garcia P, Demotes J, the PERMIT Group.
Ref:

Glaab E, Rauschenberger A, Banzi R, et al Biomarker discovery studies for patient stratification using machine learning analysis of omics data: a scoping review. BMJ Open 2021;11:e053674. doi: 10.1136/bmjopen-2021-053674

Methodological approaches for personalised medicine: protocol for a series of scoping reviews
Publication date: April 2021
Author(s): Banzi, Rita; Gerardi, Chiara; Fratelli, Maddalena; Garcia, Paula; Teresa Torres; Josep Maria Haro Abad; Albert Sanchez Niubo; Enrico Glaab; Emanuela Oldoni; Florence Bietrix; Vibeke Fosse; Emmet McCormack; Raphael Porcher; Cecilia Superchi; Jacques Demotes-Mainard
Ref:

Banzi, R., Geraldi, C., Fratelli, M., Garcia, P., Torres, T, et al (2020). Methodological approaches for personalised medicine: protocol for a series of scoping reviews.  (Version V2_20200429). Zenodo. http://doi.org/10.5281/zenodo.3770937

Scoping review on methodological approaches for clinical trials in “personalized medicine”
Publication date: September 2020
Author(s): Gerardi C, Banzi R, Hulstaert F, San Miguel L, Imaz I, Garcia P, Demotes-Mainard J, Superchi C, Porcher R
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Advances in Evidence Synthesis: special issue Cochrane Database of Systematic Reviews 2020;(9 Suppl 1). https://doi.org/10.1002/14651858.CD202001

Challenges to the Reproducibility of Machine Learning Models in Health Care
Publication date: January 2020
Author(s): Beam AL, Manrai AK, Ghassemi M.
Ref:

JAMA. 2020 Jan 6.

Recommendation Paper on the Initiation and Conduct of Complex Clinical Trials
Publication date: February 2019
Author(s): Clinical Trials Facilitation and Coordination Group (CTFG)
Personalized medicine in Europe: not yet personal enough?
Publication date: April 2017
Author(s): Di Paolo A, Sarkozy F, Ryll B, Siebert U.
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BMC health services research. 2017 Dec;17(1):289.

Personalized medicine: hope or hype?
Publication date: June 2012
Author(s): Salari K, Watkins H, Ashley EA.
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European heart journal. 2012 Jul 1;33(13):1564-70.